HL_6TH6_057

3D structure

PDB id

6TH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

GCGAAAGCC

Length

9 nucleotides

Bulged bases

6TH6|1|BA|A|1020

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TH6_057 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.2107

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6TH6|1|BA|G|1015
6TH6|1|BA|C|1016
6TH6|1|BA|G|1017
6TH6|1|BA|A|1018
6TH6|1|BA|A|1019
6TH6|1|BA|A|1020
6TH6|1|BA|G|1021
6TH6|1|BA|C|1022
6TH6|1|BA|C|1023

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain Ap

30S ribosomal protein S13