HL_6TH6_086

3D structure

PDB id

6TH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

GGUCAGGAAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TH6_086 not in the Motif Atlas

Geometric match to HL_8C3A_054

Geometric discrepancy: 0.2921

The information below is about HL_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6TH6|1|BA|G|2406
6TH6|1|BA|G|2407
6TH6|1|BA|U|2408
6TH6|1|BA|C|2409
6TH6|1|BA|A|2410
6TH6|1|BA|G|2411
6TH6|1|BA|G|2412
6TH6|1|BA|A|2413
6TH6|1|BA|A|2414
6TH6|1|BA|U|2415
6TH6|1|BA|C|2416

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BF

50S ribosomal protein L5