HL_6TH6_087

3D structure

PDB id

6TH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

UGCAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TH6_087 not in the Motif Atlas

Geometric match to HL_5J7L_189

Geometric discrepancy: 0.183

The information below is about HL_5J7L_189

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

6TH6|1|BA|U|2427
6TH6|1|BA|G|2428
6TH6|1|BA|C|2429
6TH6|1|BA|A|2430
6TH6|1|BA|A|2431
6TH6|1|BA|G|2432
6TH6|1|BA|G|2433
6TH6|1|BA|G|2434

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BJ

50S ribosomal protein L10e

Chain BQ

50S ribosomal protein L18

Chain BU

50S ribosomal protein L21e