HL_6TH6_109

3D structure

PDB id

6TH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

(OMU)UUAGUAAAAA

Length

11 nucleotides

Bulged bases

6TH6|1|BA|A|1908, 6TH6|1|BA|G|1909, 6TH6|1|BA|U|1910, 6TH6|1|BA|A|1914

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TH6_109 not in the Motif Atlas

Homologous match to HL_4V9F_047

Geometric discrepancy: 0.12

The information below is about HL_4V9F_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87681.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

10

Unit IDs

6TH6|1|BA|OMU|1905
6TH6|1|BA|U|1906
6TH6|1|BA|U|1907
6TH6|1|BA|A|1908
6TH6|1|BA|G|1909
6TH6|1|BA|U|1910
6TH6|1|BA|A|1911
6TH6|1|BA|A|1912
6TH6|1|BA|A|1913
6TH6|1|BA|A|1914
6TH6|1|BA|A|1915

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L2

Chain Bh

50S ribosomal protein L37e