HL_6TNN_004

3D structure

PDB id

6TNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mini-RNase III (Mini-III) bound to 50S ribosome with precursor 23S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

CGUAAUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TNN_004 not in the Motif Atlas

Homologous match to HL_4WF9_004

Geometric discrepancy: 0.2465

The information below is about HL_4WF9_004

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.3

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6TNN|1|U|C|134
6TNN|1|U|G|135
6TNN|1|U|U|136
6TNN|1|U|A|137
6TNN|1|U|A|138
6TNN|1|U|U|139
6TNN|1|U|G|140
6TNN|1|U|G|141

Current chains

Chain U

pre-23S rRNA

Nearby chains

Chain m

50S ribosomal protein L23

Chain v

50S ribosomal protein L29