HL_6TNN_024

3D structure

PDB id

6TNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mini-RNase III (Mini-III) bound to 50S ribosome with precursor 23S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

UGAAAUG

Length

7 nucleotides

Bulged bases

6TNN|1|U|A|826, 6TNN|1|U|U|829

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TNN_024 not in the Motif Atlas

Homologous match to HL_7A0S_023

Geometric discrepancy: 0.1437

The information below is about HL_7A0S_023

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_51020.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

14

Unit IDs

6TNN|1|U|U|824
6TNN|1|U|G|825
6TNN|1|U|A|826
6TNN|1|U|A|827
6TNN|1|U|A|828
6TNN|1|U|U|829
6TNN|1|U|G|830

Current chains

Chain U

pre-23S rRNA

Nearby chains

Chain W

50S ribosomal protein L2