HL_6TNN_050

3D structure

PDB id

6TNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mini-RNase III (Mini-III) bound to 50S ribosome with precursor 23S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

6TNN|1|U|U|1982

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TNN_050 not in the Motif Atlas

Homologous match to HL_5J7L_182

Geometric discrepancy: 0.1326

The information below is about HL_5J7L_182

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

6TNN|1|U|G|1976
6TNN|1|U|G|1977
6TNN|1|U|U|1978
6TNN|1|U|A|1979
6TNN|1|U|A|1980
6TNN|1|U|G|1981
6TNN|1|U|U|1982
6TNN|1|U|U|1983
6TNN|1|U|C|1984

Current chains

Chain U

pre-23S rRNA

Nearby chains

Chain d

50S ribosomal protein L14