HL_6TNN_067

3D structure

PDB id

6TNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mini-RNase III (Mini-III) bound to 50S ribosome with precursor 23S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

6TNN|1|U|G|2778, 6TNN|1|U|C|2782

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TNN_067 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.111

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6TNN|1|U|C|2772
6TNN|1|U|U|2773
6TNN|1|U|G|2774
6TNN|1|U|A|2775
6TNN|1|U|A|2776
6TNN|1|U|A|2777
6TNN|1|U|G|2778
6TNN|1|U|C|2779
6TNN|1|U|A|2780
6TNN|1|U|U|2781
6TNN|1|U|C|2782
6TNN|1|U|U|2783
6TNN|1|U|A|2784
6TNN|1|U|A|2785
6TNN|1|U|G|2786

Current chains

Chain U

pre-23S rRNA

Nearby chains

Chain a

50S ribosomal protein L6

Chain t

50S ribosomal protein L36