HL_6TNN_075

3D structure

PDB id

6TNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mini-RNase III (Mini-III) bound to 50S ribosome with precursor 23S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

GUUGGAAAU

Length

9 nucleotides

Bulged bases

6TNN|1|U|G|2335

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TNN_075 not in the Motif Atlas

Homologous match to HL_5J7L_219

Geometric discrepancy: 0.543

The information below is about HL_5J7L_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50860.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6TNN|1|U|G|2331
6TNN|1|U|U|2332
6TNN|1|U|U|2333
6TNN|1|U|G|2334
6TNN|1|U|G|2335
6TNN|1|U|A|2336
6TNN|1|U|A|2337
6TNN|1|U|A|2338
6TNN|1|U|U|2339

Current chains

Chain U

pre-23S rRNA

Nearby chains

Chain Z

50S ribosomal protein L5