HL_6TNU_024

3D structure

PDB id

6TNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUUUUUAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TNU_024 not in the Motif Atlas

Homologous match to HL_8P9A_212

Geometric discrepancy: 0.3586

The information below is about HL_8P9A_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97917.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6TNU|1|2|U|1055
6TNU|1|2|U|1056
6TNU|1|2|U|1057
6TNU|1|2|U|1058
6TNU|1|2|U|1059
6TNU|1|2|U|1060
6TNU|1|2|A|1061
6TNU|1|2|A|1062
6TNU|1|2|U|1063
6TNU|1|2|G|1064

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Q

40S ribosomal protein S1-A

Chain f

40S ribosomal protein S27-A