HL_6TNU_051

3D structure

PDB id

6TNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

6TNU|1|BQ|C|648

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TNU_051 not in the Motif Atlas

Homologous match to HL_8C3A_014

Geometric discrepancy: 0.1005

The information below is about HL_8C3A_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

6TNU|1|BQ|U|640
6TNU|1|BQ|C|641
6TNU|1|BQ|U|642
6TNU|1|BQ|U|643
6TNU|1|BQ|G|644
6TNU|1|BQ|A|645
6TNU|1|BQ|A|646
6TNU|1|BQ|A|647
6TNU|1|BQ|C|648
6TNU|1|BQ|A|649

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AR

60S ribosomal protein L28

Chain BA

60S ribosomal protein L3

Chain BG

60S ribosomal protein L32