HL_6TNU_058

3D structure

PDB id

6TNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

6TNU|1|BQ|A|913, 6TNU|1|BQ|G|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TNU_058 not in the Motif Atlas

Homologous match to HL_5TBW_021

Geometric discrepancy: 0.0877

The information below is about HL_5TBW_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6TNU|1|BQ|G|910
6TNU|1|BQ|C|911
6TNU|1|BQ|G|912
6TNU|1|BQ|A|913
6TNU|1|BQ|A|914
6TNU|1|BQ|A|915
6TNU|1|BQ|G|916
6TNU|1|BQ|A|917
6TNU|1|BQ|C|918

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AF

60S ribosomal protein L37-A

Chain AQ

60S ribosomal protein L15-A

Chain AW

60S ribosomal protein L2-A