HL_6TNU_069

3D structure

PDB id

6TNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

6TNU|1|BQ|G|1507, 6TNU|1|BQ|U|1511

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TNU_069 not in the Motif Atlas

Homologous match to HL_8C3A_032

Geometric discrepancy: 0.1424

The information below is about HL_8C3A_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

6TNU|1|BQ|A|1506
6TNU|1|BQ|G|1507
6TNU|1|BQ|C|1508
6TNU|1|BQ|A|1509
6TNU|1|BQ|G|1510
6TNU|1|BQ|U|1511
6TNU|1|BQ|U|1512

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AL

60S ribosomal protein L39

Chain AX

60S ribosomal protein L17-A

Chain BF

60S ribosomal protein L19-A