HL_6TNU_074

3D structure

PDB id

6TNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUAUCUUU

Length

9 nucleotides

Bulged bases

6TNU|1|BQ|U|1687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TNU_074 not in the Motif Atlas

Homologous match to HL_5TBW_037

Geometric discrepancy: 0.1384

The information below is about HL_5TBW_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6TNU|1|BQ|G|1680
6TNU|1|BQ|U|1681
6TNU|1|BQ|U|1682
6TNU|1|BQ|A|1683
6TNU|1|BQ|U|1684
6TNU|1|BQ|C|1685
6TNU|1|BQ|U|1686
6TNU|1|BQ|U|1687
6TNU|1|BQ|U|1688

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain BF

60S ribosomal protein L19-A

Chain BL

60S ribosomal protein L22-A