HL_6TNU_119

3D structure

PDB id

6TNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAGUGGAAG

Length

9 nucleotides

Bulged bases

6TNU|1|n|U|16

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TNU_119 not in the Motif Atlas

Homologous match to HL_1YFG_001

Geometric discrepancy: 0.3676

The information below is about HL_1YFG_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6TNU|1|n|C|13
6TNU|1|n|A|14
6TNU|1|n|G|15
6TNU|1|n|U|16
6TNU|1|n|G|18
6TNU|1|n|G|19
6TNU|1|n|A|20
6TNU|1|n|A|21
6TNU|1|n|G|22

Current chains

Chain n

P-site tRNA

Nearby chains

Chain AG

60S ribosomal protein L11-B

Chain AP

60S ribosomal protein L42-A

Chain BQ

Large subunit ribosomal RNA; LSU rRNA

Chain eI

Eukaryotic translation initiation factor 5A-1