HL_6TPQ_007

3D structure

PDB id

6TPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNase M5 bound to 50S ribosome with precursor 5S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

CAAAUG

Length

6 nucleotides

Bulged bases

6TPQ|1|U|U|230

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TPQ_007 not in the Motif Atlas

Homologous match to HL_4WF9_007

Geometric discrepancy: 0.2201

The information below is about HL_4WF9_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51020.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

11

Unit IDs

6TPQ|1|U|C|226
6TPQ|1|U|A|227
6TPQ|1|U|A|228
6TPQ|1|U|A|229
6TPQ|1|U|U|230
6TPQ|1|U|G|231

Current chains

Chain U

pre-23S rRNA

Nearby chains