HL_6TPQ_010

3D structure

PDB id

6TPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNase M5 bound to 50S ribosome with precursor 5S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

6TPQ|1|U|A|353

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TPQ_010 not in the Motif Atlas

Homologous match to HL_4WF9_010

Geometric discrepancy: 0.16

The information below is about HL_4WF9_010

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_13999.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

21

Unit IDs

6TPQ|1|U|C|347
6TPQ|1|U|U|348
6TPQ|1|U|G|349
6TPQ|1|U|G|350
6TPQ|1|U|A|351
6TPQ|1|U|A|352
6TPQ|1|U|A|353
6TPQ|1|U|G|354

Current chains

Chain U

pre-23S rRNA

Nearby chains

Chain n

50S ribosomal protein L24