HL_6TPQ_012

3D structure

PDB id

6TPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNase M5 bound to 50S ribosome with precursor 5S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

GUAACAGCC

Length

9 nucleotides

Bulged bases

6TPQ|1|U|A|371, 6TPQ|1|U|A|372, 6TPQ|1|U|C|373

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TPQ_012 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.1093

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

6TPQ|1|U|G|369
6TPQ|1|U|U|370
6TPQ|1|U|A|371
6TPQ|1|U|A|372
6TPQ|1|U|C|373
6TPQ|1|U|A|374
6TPQ|1|U|G|375
6TPQ|1|U|C|376
6TPQ|1|U|C|377

Current chains

Chain U

pre-23S rRNA

Nearby chains

Chain Y

50S ribosomal protein L4

Chain n

50S ribosomal protein L24