HL_6TPQ_014

3D structure

PDB id

6TPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNase M5 bound to 50S ribosome with precursor 5S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

6TPQ|1|U|G|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TPQ_014 not in the Motif Atlas

Homologous match to HL_7A0S_014

Geometric discrepancy: 0.1102

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6TPQ|1|U|G|455
6TPQ|1|U|G|456
6TPQ|1|U|A|457
6TPQ|1|U|C|458
6TPQ|1|U|C|459
6TPQ|1|U|A|460
6TPQ|1|U|U|461
6TPQ|1|U|C|462

Current chains

Chain U

pre-23S rRNA

Nearby chains