HL_6TPQ_019

3D structure

PDB id

6TPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNase M5 bound to 50S ribosome with precursor 5S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

AGAAGAU

Length

7 nucleotides

Bulged bases

6TPQ|1|U|A|657

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TPQ_019 not in the Motif Atlas

Geometric match to HL_5J7L_179

Geometric discrepancy: 0.2562

The information below is about HL_5J7L_179

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_04783.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

6TPQ|1|U|A|654
6TPQ|1|U|G|655
6TPQ|1|U|A|656
6TPQ|1|U|A|657
6TPQ|1|U|G|658
6TPQ|1|U|A|659
6TPQ|1|U|U|660

Current chains

Chain U

pre-23S rRNA

Nearby chains

Chain Y

50S ribosomal protein L4