HL_6TPQ_023
3D structure
- PDB id
- 6TPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RNase M5 bound to 50S ribosome with precursor 5S rRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.07 Å
Loop
- Sequence
- CGUUGAAAAG
- Length
- 10 nucleotides
- Bulged bases
- 6TPQ|1|U|U|792, 6TPQ|1|U|A|796, 6TPQ|1|U|A|797
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6TPQ_023 not in the Motif Atlas
- Homologous match to HL_7A0S_022
- Geometric discrepancy: 0.1141
- The information below is about HL_7A0S_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50204.1
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 11
Unit IDs
6TPQ|1|U|C|789
6TPQ|1|U|G|790
6TPQ|1|U|U|791
6TPQ|1|U|U|792
6TPQ|1|U|G|793
6TPQ|1|U|A|794
6TPQ|1|U|A|795
6TPQ|1|U|A|796
6TPQ|1|U|A|797
6TPQ|1|U|G|798
Current chains
- Chain U
- pre-23S rRNA
Nearby chains
- Chain X
- 50S ribosomal protein L3
- Chain l
- 50S ribosomal protein L22
- Chain p
- 50S ribosomal protein L32
- Chain r
- 50S ribosomal protein L34
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