HL_6TPQ_024

3D structure

PDB id

6TPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNase M5 bound to 50S ribosome with precursor 5S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

UGAAAUG

Length

7 nucleotides

Bulged bases

6TPQ|1|U|A|826, 6TPQ|1|U|U|829

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TPQ_024 not in the Motif Atlas

Homologous match to HL_7A0S_023

Geometric discrepancy: 0.1186

The information below is about HL_7A0S_023

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_51020.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

11

Unit IDs

6TPQ|1|U|U|824
6TPQ|1|U|G|825
6TPQ|1|U|A|826
6TPQ|1|U|A|827
6TPQ|1|U|A|828
6TPQ|1|U|U|829
6TPQ|1|U|G|830

Current chains

Chain U

pre-23S rRNA

Nearby chains

Chain W

50S ribosomal protein L2