HL_6TPQ_026

3D structure

PDB id

6TPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNase M5 bound to 50S ribosome with precursor 5S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

CCUACCG

Length

7 nucleotides

Bulged bases

6TPQ|1|U|U|932

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TPQ_026 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3623

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

6TPQ|1|U|C|930
6TPQ|1|U|C|931
6TPQ|1|U|U|932
6TPQ|1|U|A|933
6TPQ|1|U|C|934
6TPQ|1|U|C|935
6TPQ|1|U|G|936

Current chains

Chain U

pre-23S rRNA

Nearby chains