HL_6TPQ_027
3D structure
- PDB id
- 6TPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RNase M5 bound to 50S ribosome with precursor 5S rRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.07 Å
Loop
- Sequence
- UGAUAAGA
- Length
- 8 nucleotides
- Bulged bases
- 6TPQ|1|U|U|1002, 6TPQ|1|U|G|1005
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6TPQ_027 not in the Motif Atlas
- Homologous match to HL_7RQB_027
- Geometric discrepancy: 0.1737
- The information below is about HL_7RQB_027
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_35490.2
- Basepair signature
- cWW-tSH-F-F
- Number of instances in this motif group
- 299
Unit IDs
6TPQ|1|U|U|999
6TPQ|1|U|G|1000
6TPQ|1|U|A|1001
6TPQ|1|U|U|1002
6TPQ|1|U|A|1003
6TPQ|1|U|A|1004
6TPQ|1|U|G|1005
6TPQ|1|U|A|1006
Current chains
- Chain U
- pre-23S rRNA
Nearby chains
- Chain V
- 5S ribosomal RNA; 5S rRNA
- Chain f
- 50S ribosomal protein L16
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