HL_6TPQ_055

3D structure

PDB id

6TPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNase M5 bound to 50S ribosome with precursor 5S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

6TPQ|1|U|A|2295, 6TPQ|1|U|C|2302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TPQ_055 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.1503

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

6TPQ|1|U|C|2291
6TPQ|1|U|U|2292
6TPQ|1|U|A|2293
6TPQ|1|U|A|2294
6TPQ|1|U|A|2295
6TPQ|1|U|A|2296
6TPQ|1|U|G|2297
6TPQ|1|U|G|2298
6TPQ|1|U|U|2299
6TPQ|1|U|A|2300
6TPQ|1|U|A|2301
6TPQ|1|U|C|2302
6TPQ|1|U|G|2303

Current chains

Chain U

pre-23S rRNA

Nearby chains

Chain f

50S ribosomal protein L16

Chain o

50S ribosomal protein L27