HL_6TPQ_056

3D structure

PDB id

6TPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNase M5 bound to 50S ribosome with precursor 5S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

GGUUGGAAAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TPQ_056 not in the Motif Atlas

Homologous match to HL_5J7L_188

Geometric discrepancy: 0.4033

The information below is about HL_5J7L_188

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.4

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6TPQ|1|U|G|2330
6TPQ|1|U|G|2331
6TPQ|1|U|U|2332
6TPQ|1|U|U|2333
6TPQ|1|U|G|2334
6TPQ|1|U|G|2335
6TPQ|1|U|A|2336
6TPQ|1|U|A|2337
6TPQ|1|U|A|2338
6TPQ|1|U|U|2339
6TPQ|1|U|C|2340

Current chains

Chain U

pre-23S rRNA

Nearby chains

Chain Z

50S ribosomal protein L5

Chain h

50S ribosomal protein L18