HL_6TPQ_061

3D structure

PDB id

6TPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNase M5 bound to 50S ribosome with precursor 5S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

AGUCCACAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TPQ_061 not in the Motif Atlas

Homologous match to HL_4WF9_056

Geometric discrepancy: 0.1899

The information below is about HL_4WF9_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6TPQ|1|U|A|2498
6TPQ|1|U|G|2499
6TPQ|1|U|U|2500
6TPQ|1|U|C|2501
6TPQ|1|U|C|2502
6TPQ|1|U|A|2503
6TPQ|1|U|C|2504
6TPQ|1|U|A|2505
6TPQ|1|U|U|2506

Current chains

Chain U

pre-23S rRNA

Nearby chains

Chain t

50S ribosomal protein L36