HL_6TPQ_062
3D structure
- PDB id
- 6TPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RNase M5 bound to 50S ribosome with precursor 5S rRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.07 Å
Loop
- Sequence
- UGUAGUCG
- Length
- 8 nucleotides
- Bulged bases
- 6TPQ|1|U|G|2556
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6TPQ_062 not in the Motif Atlas
- Homologous match to HL_4WF9_057
- Geometric discrepancy: 0.1715
- The information below is about HL_4WF9_057
- Detailed Annotation
- GNRA variation
- Broad Annotation
- GNRA variation
- Motif group
- HL_46665.2
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
6TPQ|1|U|U|2555
6TPQ|1|U|G|2556
6TPQ|1|U|U|2557
6TPQ|1|U|A|2558
6TPQ|1|U|G|2559
6TPQ|1|U|U|2560
6TPQ|1|U|C|2561
6TPQ|1|U|G|2562
Current chains
- Chain U
- pre-23S rRNA
Nearby chains
- Chain a
- 50S ribosomal protein L6
- Chain t
- 50S ribosomal protein L36
Coloring options: