HL_6TPQ_063

3D structure

PDB id

6TPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNase M5 bound to 50S ribosome with precursor 5S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

CUGUUCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TPQ_063 not in the Motif Atlas

Homologous match to HL_4WF9_058

Geometric discrepancy: 0.1533

The information below is about HL_4WF9_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6TPQ|1|U|C|2578
6TPQ|1|U|U|2579
6TPQ|1|U|G|2580
6TPQ|1|U|U|2581
6TPQ|1|U|U|2582
6TPQ|1|U|C|2583
6TPQ|1|U|G|2584

Current chains

Chain U

pre-23S rRNA

Nearby chains