HL_6TPQ_067

3D structure

PDB id

6TPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNase M5 bound to 50S ribosome with precursor 5S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

6TPQ|1|U|G|2778, 6TPQ|1|U|C|2782

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TPQ_067 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.1025

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6TPQ|1|U|C|2772
6TPQ|1|U|U|2773
6TPQ|1|U|G|2774
6TPQ|1|U|A|2775
6TPQ|1|U|A|2776
6TPQ|1|U|A|2777
6TPQ|1|U|G|2778
6TPQ|1|U|C|2779
6TPQ|1|U|A|2780
6TPQ|1|U|U|2781
6TPQ|1|U|C|2782
6TPQ|1|U|U|2783
6TPQ|1|U|A|2784
6TPQ|1|U|A|2785
6TPQ|1|U|G|2786

Current chains

Chain U

pre-23S rRNA

Nearby chains

Chain a

50S ribosomal protein L6

Chain c

50S ribosomal protein L13

Chain t

50S ribosomal protein L36