HL_6TPQ_074

3D structure

PDB id

6TPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNase M5 bound to 50S ribosome with precursor 5S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

GAGAGAAUC

Length

9 nucleotides

Bulged bases

6TPQ|1|U|A|1677

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TPQ_074 not in the Motif Atlas

Homologous match to HL_4WF9_039

Geometric discrepancy: 0.264

The information below is about HL_4WF9_039

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6TPQ|1|U|G|1672
6TPQ|1|U|A|1673
6TPQ|1|U|G|1674
6TPQ|1|U|A|1675
6TPQ|1|U|G|1676
6TPQ|1|U|A|1677
6TPQ|1|U|A|1678
6TPQ|1|U|U|1679
6TPQ|1|U|C|1680

Current chains

Chain U

pre-23S rRNA

Nearby chains