HL_6TQA_003

3D structure

PDB id

6TQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray structure of Roquin ROQ domain in complex with a UCP3 CDE2 SL RNA motif

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

AUAUU

Length

5 nucleotides

Bulged bases (A, C, G, U)

10U, 12U

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69858.1

Basepair signature

cWW-F

Number of instances in this motif group

18

Unit IDs

6TQA|1|G|A|9
6TQA|1|G|U|10
6TQA|1|G|A|11
6TQA|1|G|U|12
6TQA|1|G|U|13

Current chains

Chain G

RNA (5'-R(P*GP*GP*UP*GP*CP*CP*UP*AP*AP*UP*AP*UP*UP*UP*AP*GP*GP*CP*AP*CP*(CCC))-3')

Nearby chains

Chain B

Roquin-1

Chain C

Roquin-1