Motif HL_56334.1 Version HL_56334.1 of this group appears in releases 3.89 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 1-3 | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1ZBH_001 | 1ZBH | 0.4061 | 3 | Mini UNCG | F | RNA (20-mer) | U | 11 | U | 14 | A | 16 | cWW |
| 2 | HL_8UIW_004 | 8UIW | 0.3606 | 3 | Mini UNCG | N | yjdF RNA (R. gauvreauii) | U | 105 | U | 108 | A | 110 | cWW |
| 3 | HL_4OOG_001 | 4OOG | 0.4671 | 3 | Mini UNCG | D | 34-mer RNA | G | 14 | U | 17 | C | 19 | cWW |
| 4 | HL_5T16_002 | 5T16 | 0.9258 | 3 | Mini UNCG | H | RNA substrate analog | G | 16 | U | 19 | C | 21 | cWW |
| 5 | HL_4QOZ_001 | 4QOZ | 0.3756 | 3 | Mini UNCG | A | histone mRNA stem-loop | U | 11 | U | 14 | A | 16 | cWW |
| 6 | HL_4TUW_002 | 4TUW | 0.3846 | 3 | Mini UNCG | C | HISTONE MRNA 3' STEM LOOP | U | 13 | U | 16 | A | 18 | cWW |
| 7 | HL_8SP9_002 | 8SP9 | 0.2405 | 2 | Mini UNCG | C | tRNA scaffold,CVB3 Cloverleaf RNA | C | 67 | U | 69 | G | 71 | cWW |
| 8 | HL_4V9F_004 | 4V9F | 0.0000 | 2 | Mini UNCG related | 0 | LSU rRNA | U | 125 | A | 128 | A | 129 | cWW |
| 9 | HL_6AJK_001 | 6AJK | 0.1731 | 3 | Mini UNCG related | B | RNA (28-MER) | U | 933 | A | 936 | A | 938 | cWW |
| 10 | HL_6TQA_003 | 6TQA | 0.3430 | 2 | Mini UNCG | G | RNA (21-mer) | A | 9 | A | 11 | U | 13 | cWW |
| 11 | HL_6TQB_001 | 6TQB | 0.3084 | 2 | Mini UNCG | B | RNA (19-mer) | A | 10 | A | 12 | U | 14 | cWW |
| 12 | HL_4QI2_003 | 4QI2 | 0.3822 | 2 | Mini UNCG | G | RNA (23-mer) | C | 10 | G | 12 | G | 14 | cWW |
| 13 | HL_4QIL_002 | 4QIL | 0.3822 | 2 | Mini UNCG | C | RNA (19-mer) | C | 8 | G | 10 | G | 12 | cWW |
| 14 | HL_4Z31_001 | 4Z31 | 0.3895 | 2 | Mini UNCG | E | RNA (15-mer) | C | 6 | G | 8 | G | 10 | cWW |
| 15 | HL_4ZLD_001 | 4ZLD | 0.3570 | 2 | Mini UNCG | B | RNA (17-mer) | C | 7 | G | 9 | G | 11 | cWW |
| 16 | HL_6AAX_001 | 6AAX | 0.3612 | 3 | Mini UNCG | B | RNA (28-mer) | U | 933 | A | 936 | A | 938 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUGUG | 4 |
| UUUUCA | 3 |
| GAGUCC | 2 |
| UGGAAA | 2 |
| AUAUU | 2 |
| UCCUUA | 1 |
| CAUUG | 1 |
| UCUAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGU | 4 |
| UUUC | 3 |
| AGUC | 2 |
| GGAA | 2 |
| UAU | 2 |
| CCUU | 1 |
| AUU | 1 |
| CUA | 1 |
- Annotations
-
- Mini UNCG (14)
- Mini UNCG related (2)
- Basepair signature
- cWW-F
- Heat map statistics
- Min 0.05 | Avg 0.41 | Max 0.96
Coloring options: