HL_6U48_008

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6U48_008 not in the Motif Atlas

Homologous match to HL_5J7L_141

Geometric discrepancy: 0.086

The information below is about HL_5J7L_141

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37369.2

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

9

Unit IDs

6U48|1|CA|C|246
6U48|1|CA|G|247
6U48|1|CA|G|248
6U48|1|CA|C|249
6U48|1|CA|G|250
6U48|1|CA|A|251
6U48|1|CA|G|252

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C4

50S ribosomal protein bL35

Chain CM

50S ribosomal protein uL15

Chain CY

50S ribosomal protein bL28