RNA 3D Hub //

6U48 Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6U48_0011/CA/59:68No text annotation
homologous
HL_5J7L_134
NA
HL_6U48_0021/CA/87:95No text annotation
homologous
HL_5J7L_135
NA
HL_6U48_0031/CA/123:128No text annotation
homologous
HL_5J7L_136
NA
HL_6U48_0051/CA/158:168No text annotation
homologous
HL_5J7L_138
NA
HL_6U48_0061/CA/194:201No text annotation
homologous
HL_4WF9_006
HL_48677.1
HL_6U48_0071/CA/225:230No text annotation
homologous
HL_5J7L_140
NA
HL_6U48_0081/CA/246:252No text annotation
homologous
HL_5J7L_141
NA
HL_6U48_0091/CA/305:312T-loop with 1 bulged base
homologous
HL_7A0S_010
HL_13999.1
HL_6U48_0101/CA/319:323No text annotation
homologous
HL_4WF9_011
HL_75660.6
HL_6U48_0111/CA/327:335T-loop with unstacked turn
homologous
HL_5J7L_144
NA
HL_6U48_0121/CA/382:392No text annotation
homologous
HL_5J7L_145
NA
HL_6U48_0131/CA/410:417Pseudoknot geometry
homologous
HL_7A0S_014
HL_30680.4
HL_6U48_0141/CA/462:467GNRA
homologous
HL_7RQB_015
NA
HL_6U48_0151/CA/487:493GNRA
homologous
HL_5J7L_148
NA
HL_6U48_0751/CA/543:550No text annotation
homologous
HL_5J7L_149
NA
HL_6U48_0171/CA/566:575T-loop with 2 stacked bulged bases
homologous
HL_5J7L_150
NA
HL_6U48_0181/CA/611:617No text annotation
homologous
HL_5J7L_151
NA
HL_6U48_0191/CA/629:634GNRA
homologous
HL_5J7L_152
NA
HL_6U48_0201/CA/641:647No text annotation
homologous
HL_5J7L_153
NA
HL_6U48_0211/CA/712:719GNRA wlth tandem sheared
homologous
HL_5J7L_154
NA
HL_6U48_0221/CA/744:753No text annotation
homologous
HL_5J7L_155
NA
HL_6U48_0231/CA/779:785UNCG
geometric
HL_6JQ6_004
NA
HL_6U48_0241/CA/826:831No text annotation
homologous
HL_7RQB_025
NA
HL_6U48_0721/CA/955:962GNRA
homologous
HL_5J7L_211
NA
HL_6U48_0271/CA/978:985No text annotation
homologous
HL_5J7L_160
NA
HL_6U48_0731/CA/1167:1182No text annotation
HL_6U48_0311/CA/1222:1227GNRA
homologous
HL_5J7L_164
NA
HL_6U48_0321/CA/1281:1289T-loop with 2 stacked bulged bases
homologous
HL_5J7L_165
NA
HL_6U48_0331/CA/1324:1330Pseudoknot geometry with 3' bulge
homologous
HL_5J7L_166
NA
HL_6U48_0341/CA/1363:1368GNRA
homologous
HL_5J7L_167
NA
HL_6U48_0351/CA/1389:1398No text annotation
homologous
HL_5J7L_168
NA
HL_6U48_0361/CA/1451:1459Mini UNCG with extended bulge
geometric
HL_5J7L_169
NA
HL_6U48_0371/CA/1492:1498Pseudoknot geometry with 3' bulge
homologous
HL_5J7L_170
NA
HL_6U48_0391/CA/1565:1568No text annotation
homologous
HL_7RQB_039
NA
HL_6U48_0401/CA/1612:1619No text annotation
homologous
HL_5J7L_173
NA
HL_6U48_0411/CA/1630:1636GNRA
homologous
HL_5J7L_174
NA
HL_6U48_0421/CA/1691:1696No text annotation
homologous
HL_7RQB_042
NA
HL_6U48_0431/CA/1727:1733No text annotation
geometric
HL_5J7L_018
NA
HL_6U48_0441/CA/1752:1756No text annotation
homologous
HL_7RQB_044
NA
HL_6U48_0451/CA/1777:1787No text annotation
homologous
HL_4WF9_043
HL_87681.1
HL_6U48_0461/CA/1806:1811GNRA related
homologous
HL_5J7L_179
NA
HL_6U48_0481/CA/1910:1920No text annotation
homologous
HL_5J7L_181
NA
HL_6U48_0491/CA/1949:1957No text annotation
homologous
HL_5J7L_182
NA
HL_6U48_0501/CA/2027:2036No text annotation
homologous
HL_5J7L_183
NA
HL_6U48_0521/CA/2209:2215No text annotation
homologous
HL_5J7L_185
NA
HL_6U48_0531/CA/2248:2256No text annotation
homologous
HL_5J7L_186
NA
HL_6U48_0541/CA/2264:2276No text annotation
homologous
HL_7RQB_054
NA
HL_6U48_0551/CA/2303:2313No text annotation
homologous
HL_7RQB_055
NA
HL_6U48_0561/CA/2324:2331Pseudoknot geometry
homologous
HL_5J7L_189
NA
HL_6U48_0571/CA/2356:2361GNRA
homologous
HL_5J7L_190
NA
HL_6U48_0581/CA/2374:2379GNRA
homologous
HL_5J7L_191
NA
HL_6U48_0591/CA/2404:2413No text annotation
homologous
HL_5J7L_192
NA
HL_6U48_0601/CA/2471:2479No text annotation
homologous
HL_5J7L_193
NA
HL_6U48_0611/CA/2528:2535GNRA variation
homologous
HL_5J7L_194
NA
HL_6U48_0621/CA/2551:2557No text annotation
homologous
HL_5J7L_195
NA
HL_6U48_0631/CA/2594:2599GNRA
homologous
HL_7RQB_063
NA
HL_6U48_0641/CA/2658:2663GNRA
geometric
HL_4QLM_001
HL_34789.1
HL_6U48_0651/CA/2701:2706Ribsomal LSU H95
homologous
HL_5J7L_198
NA
HL_6U48_0661/CA/2745:2759No text annotation
homologous
HL_5J7L_199
NA
HL_6U48_0671/CA/2795:2801UNCG variation
homologous
HL_5J7L_200
NA
HL_6U48_0681/CA/2819:2827No text annotation
homologous
HL_5J7L_201
NA
HL_6U48_0691/CA/2856:2861GNRA
homologous
HL_7A0S_068
HL_34789.1
HL_6U48_0761/CB/34:48No text annotation
homologous
HL_4V9F_074
HL_97756.3
HL_6U48_0701/CB/38:44No text annotation
homologous
HL_5J7L_203
NA
HL_6U48_0711/CB/86:90Mini UNCG
homologous
HL_5J7L_204
NA

Problematic loops

#loop idProblemSequence
HL_6U48_004No text annotation
HL_6U48_016No text annotation
HL_6U48_025No text annotation
HL_6U48_026No text annotation
HL_6U48_028No text annotation
HL_6U48_029No text annotation
HL_6U48_030No text annotation
HL_6U48_038UNCG
HL_6U48_047GNRA variation
HL_6U48_051No text annotation
HL_6U48_074No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6U48_0011/CA/24:30,
1/CA/510:516		Triple sheared with non-canonical cWW
geometric
IL_5J7L_245
NA
IL_6U48_0021/CA/36:37,
1/CA/442:444		Single bulged A
homologous
IL_7RQB_002
NA
IL_6U48_0031/CA/43:44,
1/CA/434:436		Minor groove platform
homologous
IL_5J7L_247
NA
IL_6U48_1141/CA/82:85,
1/CA/97:104		Kink-turn
geometric
IL_1U63_003
IL_24134.1
IL_6U48_0051/CA/183:184,
1/CA/212:214		Single stack bend
homologous
IL_5J7L_249
NA
IL_6U48_0061/CA/188:194,
1/CA/201:208		8x7 Sarcin-Ricin; G-bulge
geometric
IL_5J7L_250
NA
IL_6U48_0071/CA/239:245,
1/CA/253:258		7x6 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_251
NA
IL_6U48_0081/CA/269:271,
1/CA/366:370		No text annotation
homologous
IL_5J7L_252
NA
IL_6U48_0101/CA/293:295,
1/CA/343:347		No text annotation
homologous
IL_5J7L_254
NA
IL_6U48_0111/CA/481:484,
1/CA/496:509		No text annotation
geometric
IL_5J7L_255
NA
IL_6U48_0121/CA/536:539,
1/CA/554:557		Double sheared
homologous
IL_5J7L_256
NA
IL_6U48_0131/CA/564:566,
1/CA/575:577		Isolated non-canonical cWW pair
geometric
IL_5J7L_257
NA
IL_6U48_0141/CA/606:610,
1/CA/618:622		AAA cross-strand stack
homologous
IL_5J7L_258
NA
IL_6U48_0151/CA/672:674,
1/CA/806:808		No text annotation
geometric
IL_7RQB_017
NA
IL_6U48_0161/CA/674:678,
1/CA/799:806		tHW-tHW cross-strand stack
homologous
IL_7RQB_018
NA
IL_6U48_0171/CA/697:698,
1/CA/763:765		Single bulged A
geometric
IL_5J7L_261
NA
IL_6U48_0181/CA/702:703,
1/CA/728:730		Single bulged G
geometric
IL_5J7L_262
NA
IL_6U48_0191/CA/703:707,
1/CA/724:728		Triple sheared
homologous
IL_7RQB_021
NA
IL_6U48_0201/CA/738:740,
1/CA/757:758		Major groove platform
homologous
IL_5J7L_264
NA
IL_6U48_0211/CA/775:777,
1/CA/787:791		Multiple bulged bases
geometric
IL_5J7L_265
NA
IL_6U48_0221/CA/844:847,
1/CA/933:934		90 degree turn
homologous
IL_5J7L_267
NA
IL_6U48_1161/CA/844:848,
1/CA/930:934		No text annotation
homologous
IL_5J7L_399
NA
IL_6U48_0231/CA/847:848,
1/CA/930:933		Stack outside cWW
geometric
IL_5J7L_268
NA
IL_6U48_0241/CA/850:851,
1/CA/926:928		Single stack bend
homologous
IL_5J7L_269
NA
IL_6U48_0251/CA/856:862,
1/CA/915:921		7x7 Sarcin-Ricin with intercalated A; G-bulge
geometric
IL_5J7L_270
NA
IL_6U48_0261/CA/862:863,
1/CA/913:915		Single bulged G
homologous
IL_5J7L_271
NA
IL_6U48_0271/CA/864:868,
1/CA/909:912		C-loop with bulged stacked A's
homologous
IL_5J7L_272
NA
IL_6U48_0281/CA/870:872,
1/CA/905:907		Isolated non-canonical cWW pair
homologous
IL_5J7L_273
NA
IL_6U48_0301/CA/994:996,
1/CA/1159:1160		Single bulged C
homologous
IL_7RQB_035
NA
IL_6U48_0311/CA/998:1002,
1/CA/1153:1157		UAA/GAN
homologous
IL_4WF9_036
IL_08938.1
IL_6U48_0321/CA/1004:1011,
1/CA/1150:1151		SSU/LSU pseudoknot
geometric
IL_5J7L_278
NA
IL_6U48_0331/CA/1011:1013,
1/CA/1149:1150		Single bulged U
homologous
IL_5J7L_279
NA
IL_6U48_0341/CA/1018:1024,
1/CA/1140:1144		Kink-turn related
geometric
IL_5J7L_280
NA
IL_6U48_0351/CA/1024:1030,
1/CA/1124:1140		No text annotation
geometric
IL_5J7L_281
NA
IL_6U48_0361/CA/1031:1034,
1/CA/1121:1123		Isolated non-canonical cWW pair
homologous
IL_5J7L_282
NA
IL_6U48_0371/CA/1038:1041,
1/CA/1114:1117		Tandem non-canonical cWW pairs
homologous
IL_5J7L_283
NA
IL_6U48_1171/CA/1043:1051,
1/CA/1108:1112		Kink-turn
homologous
IL_5J7L_284
NA
IL_6U48_0411/CA/1196:1198,
1/CA/1247:1250		Isolated cWS basepair
homologous
IL_5J7L_286
NA
IL_6U48_0421/CA/1202:1206,
1/CA/1240:1243		No text annotation
homologous
IL_5J7L_287
NA
IL_6U48_0431/CA/1208:1215,
1/CA/1234:1238		Kink-turn
homologous
IL_5J7L_288
NA
IL_6U48_0441/CA/1262:1269,
1/CA/2011:2017		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_289
NA
IL_6U48_0451/CA/1310:1313,
1/CA/1603:1604		Major groove platform; stack outside cWW
homologous
IL_4WF9_049
IL_74641.1
IL_6U48_0461/CA/1319:1323,
1/CA/1331:1333		C-loop
homologous
IL_5J7L_291
NA
IL_6U48_0471/CA/1351:1355,
1/CA/1376:1380		UAA/GAN
homologous
IL_5J7L_292
NA
IL_6U48_0481/CA/1357:1361,
1/CA/1370:1374		tSH-tHW-tHS
homologous
IL_5J7L_293
NA
IL_6U48_0491/CA/1415:1416,
1/CA/1582:1587		No text annotation
homologous
IL_5J7L_294
NA
IL_6U48_0501/CA/1417:1421,
1/CA/1577:1581		UAA/GAN
homologous
IL_5J7L_295
NA
IL_6U48_0511/CA/1432:1435,
1/CA/1557:1561		Tandem non-canonical cWW pairs
homologous
IL_5J7L_296
NA
IL_6U48_0521/CA/1437:1440,
1/CA/1551:1555		tSH-tHW
homologous
IL_5J7L_297
NA
IL_6U48_0531/CA/1450:1451,
1/CA/1459:1461		Single bulged U
homologous
IL_5J7L_298
NA
IL_6U48_0541/CA/1468:1471,
1/CA/1520:1524		No text annotation
homologous
IL_5J7L_299
NA
IL_6U48_0551/CA/1474:1478,
1/CA/1513:1517		tSH-tHW-tHS
homologous
IL_5J7L_300
NA
IL_6U48_1181/CA/1481:1482,
1/CA/1507:1510		180 degree turn
homologous
IL_5J7L_301
NA
IL_6U48_0571/CA/1489:1491,
1/CA/1499:1500		Single bulged A
homologous
IL_5J7L_302
NA
IL_6U48_0581/CA/1526:1529,
1/CA/1542:1546		UAA/GAN variation
homologous
IL_5J7L_303
NA
IL_6U48_0591/CA/1651:1656,
1/CA/2004:2006		No text annotation
homologous
IL_5J7L_304
NA
IL_6U48_0601/CA/1663:1665,
1/CA/1995:1997		Isolated tWW turn
homologous
IL_4WF9_063
IL_10432.1
IL_6U48_0611/CA/1666:1669,
1/CA/1993:1994		Major groove platform; stack outside cWW
geometric
IL_7RQB_066
NA
IL_6U48_1191/CA/1666:1674,
1/CA/1990:1994		No text annotation
homologous
IL_5J7L_386
NA
IL_6U48_0621/CA/1669:1674,
1/CA/1990:1993		Intercalated tWH
homologous
IL_5J7L_307
NA
IL_6U48_0631/CA/1686:1691,
1/CA/1696:1702		tSH-tSH-tHH-tHS
geometric
IL_5J7L_308
NA
IL_6U48_0641/CA/1712:1718,
1/CA/1742:1746		6x5 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_309
NA
IL_6U48_0651/CA/1720:1724,
1/CA/1736:1740		Triple sheared
homologous
IL_5J7L_310
NA
IL_6U48_0661/CA/1770:1771,
1/CA/1980:1982		Single bulged A
homologous
IL_7A0S_064
IL_14190.1
IL_6U48_0671/CA/1798:1804,
1/CA/1813:1821		Kink-turn related
homologous
IL_5J7L_313
NA
IL_6U48_0681/CA/1837:1840,
1/CA/1902:1903		Minor groove platform, major groove intercalation
homologous
IL_5J7L_314
NA
IL_6U48_0691/CA/1841:1842,
1/CA/1898:1901		Major groove intercalation
homologous
IL_5J7L_315
NA
IL_6U48_0701/CA/1846:1849,
1/CA/1893:1894		Major groove minor groove platform; mini C-loop
homologous
IL_5J7L_316
NA
IL_6U48_1201/CA/1851:1860,
1/CA/1882:1891		No text annotation
homologous
IL_5J7L_387
NA
IL_6U48_1211/CA/1864:1867,
1/CA/1874:1878		UAA/GAN related
homologous
IL_5J7L_317
NA
IL_6U48_0721/CA/1933:1934,
1/CA/1964:1967		Bulged stacked bases
geometric
IL_7RQB_076
NA
IL_6U48_0731/CA/1934:1945,
1/CA/1961:1964		No text annotation
homologous
IL_7A0S_072
IL_04332.3
IL_6U48_0741/CA/2050:2052,
1/CA/2617:2618		Major groove platform
homologous
IL_5J7L_320
NA
IL_6U48_0751/CA/2054:2056,
1/CA/2612:2615		No text annotation
homologous
IL_5J7L_321
NA
IL_6U48_1221/CA/2067:2069,
1/CA/2442:2443		Single bulged U
homologous
IL_7A0S_075
IL_97561.1
IL_6U48_0781/CA/2070:2071,
1/CA/2438:2441		Minor groove platform
geometric
IL_5TBW_094
NA
IL_6U48_0791/CA/2081:2083,
1/CA/2236:2239		Isolated tHS basepair with bulges
homologous
IL_5J7L_325
NA
IL_6U48_0801/CA/2085:2087,
1/CA/2232:2234		Isolated non-canonical cWW pair
homologous
IL_5J7L_326
NA
IL_6U48_1241/CA/2124:2127,
1/CA/2161:2174		No text annotation
IL_6U48_0861/CA/2202:2204,
1/CA/2220:2221		Single bulged U
homologous
IL_5J7L_331
NA
IL_6U48_0871/CA/2350:2353,
1/CA/2364:2367		Double sheared
homologous
IL_5J7L_333
NA
IL_6U48_0881/CA/2401:2403,
1/CA/2414:2415		No text annotation
geometric
IL_9AXU_122
IL_97561.1
IL_6U48_1261/CA/2453:2454,
1/CA/2498:2500		Single stack bend
homologous
IL_5J7L_391
NA
IL_6U48_1271/CA/2454:2455,
1/CA/2496:2498		Major groove platform
homologous
IL_9DFE_092
IL_48076.7
IL_6U48_1281/CA/2457:2459,
1/CA/2493:2494		Major groove platform
homologous
IL_5J7L_393
NA
IL_6U48_0911/CA/2459:2461,
1/CA/2489:2493		Major groove minor groove platform with extra cWW
homologous
IL_5J7L_337
NA
IL_6U48_0921/CA/2466:2470,
1/CA/2480:2484		Double sheared with non-canonical cWW
homologous
IL_5J7L_338
NA
IL_6U48_1291/CA/2507:2508,
1/CA/2580:2582		Major groove platform
homologous
IL_5J7L_394
NA
IL_6U48_0941/CA/2510:2512,
1/CA/2574:2578		Isolated non-canonical cWW with bulges
homologous
IL_5J7L_340
NA
IL_6U48_0951/CA/2512:2513,
1/CA/2571:2574		No text annotation
geometric
IL_5J7L_341
NA
IL_6U48_0961/CA/2522:2523,
1/CA/2540:2543		Major groove platform with intercalation
homologous
IL_5J7L_342
NA
IL_6U48_0981/CA/2591:2592,
1/CA/2601:2603		Single bulged A
homologous
IL_5J7L_344
NA
IL_6U48_0991/CA/2636:2640,
1/CA/2774:2782		tSH-tHS-tHW
homologous
IL_5J7L_345
NA
IL_6U48_1001/CA/2652:2658,
1/CA/2663:2668		Sarcin-Ricin target in LSU H95; G-bulge
homologous
IL_5J7L_346
NA
IL_6U48_1011/CA/2680:2684,
1/CA/2725:2727		C-loop
homologous
IL_5J7L_347
NA
IL_6U48_1021/CA/2687:2691,
1/CA/2718:2722		UAA/GAN related, with intercalation
homologous
IL_5J7L_348
NA
IL_6U48_1031/CA/2695:2696,
1/CA/2711:2714		Multiple bulged bases
homologous
IL_5J7L_349
NA
IL_6U48_1041/CA/2737:2742,
1/CA/2762:2767		UAA/GAN with extra cWW
homologous
IL_5J7L_350
NA
IL_6U48_1051/CA/2806:2811,
1/CA/2889:2892		No text annotation
geometric
IL_5J7L_351
NA
IL_6U48_1061/CA/2838:2839,
1/CA/2878:2880		Major groove intercalation
homologous
IL_5J7L_352
NA
IL_6U48_1071/CA/2843:2846,
1/CA/2870:2874		Multiple bulged bases with non-canonical cWW
homologous
IL_5J7L_353
NA
IL_6U48_1081/CA/2847:2852,
1/CA/2865:2869		tHS double platform
homologous
IL_5J7L_354
NA
IL_6U48_1091/CB/17:18,
1/CB/65:67		Major groove intercalation
homologous
IL_5J7L_355
NA
IL_6U48_1101/CB/23:28,
1/CB/56:60		No text annotation
homologous
IL_5J7L_356
NA
IL_6U48_1111/CB/30:31,
1/CB/51:54		Major groove minor groove platform; mini C-loop
homologous
IL_5J7L_357
NA
IL_6U48_1321/CB/34:38,
1/CB/44:48		No text annotation
homologous
IL_8OI5_138
IL_58103.12
IL_6U48_1131/CB/71:79,
1/CB/97:105		Bacterial 5S Loop E
homologous
IL_5J7L_359
NA

Problematic loops

#loop idProblemSequence
IL_6U48_004No text annotation
IL_6U48_009No text annotation
IL_6U48_115No text annotation
IL_6U48_029No text annotation
IL_6U48_038No text annotation
IL_6U48_039No text annotation
IL_6U48_040No text annotation
IL_6U48_056No text annotation
IL_6U48_071No text annotation
IL_6U48_076No text annotation
IL_6U48_077No text annotation
IL_6U48_081No text annotation
IL_6U48_123No text annotation
IL_6U48_082No text annotation
IL_6U48_083No text annotation
IL_6U48_084No text annotation
IL_6U48_085No text annotation
IL_6U48_125No text annotation
IL_6U48_131No text annotation
IL_6U48_089No text annotation
IL_6U48_090Major groove platform with extra pair
IL_6U48_093No text annotation
IL_6U48_097No text annotation
IL_6U48_130No text annotation
IL_6U48_112No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6U48_0011/CA/30:31,
1/CA/474:481,
1/CA/509:510		No text annotation
homologous
J3_7RQB_001
NA
J3_6U48_0151/CA/30:31,
1/CA/474:484,
1/CA/496:510		No text annotation
homologous
J3_5J7L_066
NA
J3_6U48_0161/CA/32:35,
1/CA/445:461,
1/CA/468:473		No text annotation
homologous
J3_5J7L_067
NA
J3_6U48_0021/CA/56:57,
1/CA/70:76,
1/CA/110:114		No text annotation
homologous
J3_5J7L_037
NA
J3_6U48_0171/CA/297:301,
1/CA/316:325,
1/CA/337:341		No text annotation
homologous
J3_5J7L_068
NA
J3_6U48_0031/CA/683:689,
1/CA/773:775,
1/CA/791:794		No text annotation
homologous
J3_5J7L_038
NA
J3_6U48_0041/CA/698:700,
1/CA/732:736,
1/CA/760:763		No text annotation
homologous
J3_7RQB_005
NA
J3_6U48_0061/CA/1298:1303,
1/CA/1625:1627,
1/CA/1639:1642		No text annotation
homologous
J3_5J7L_041
NA
J3_6U48_0071/CA/1306:1309,
1/CA/1605:1611,
1/CA/1620:1622		No text annotation
homologous
J3_7A0S_007
J3_47341.1
J3_6U48_0081/CA/1344:1349,
1/CA/1382:1385,
1/CA/1402:1403		No text annotation
homologous
J3_5J7L_043
NA
J3_6U48_0181/CA/1424:1429,
1/CA/1564:1565,
1/CA/1568:1574		No text annotation
homologous
J3_5J7L_069
NA
J3_6U48_0091/CA/2091:2093,
1/CA/2196:2200,
1/CA/2223:2228		Kink-turn 3-way junction
homologous
J3_5J7L_044
NA
J3_6U48_0191/CA/2282:2284,
1/CA/2384:2395,
1/CA/2421:2427		No text annotation
homologous
J3_5J7L_070
NA
J3_6U48_0201/CA/2295:2299,
1/CA/2317:2323,
1/CA/2332:2337		No text annotation
homologous
J3_5J7L_071
NA
J3_6U48_0111/CA/2517:2520,
1/CA/2545:2547,
1/CA/2561:2567		No text annotation
homologous
J3_5J7L_046
NA
J3_6U48_0121/CA/2789:2791,
1/CA/2805:2806,
1/CA/2892:2894		No text annotation
homologous
J3_5J7L_047
NA
J3_6U48_0131/CA/2812:2815,
1/CA/2831:2836,
1/CA/2882:2888		No text annotation
homologous
J3_5J7L_048
NA
J3_6U48_0141/CB/10:16,
1/CB/68:70,
1/CB/106:110		No text annotation
homologous
J3_5J7L_049
NA
J4_6U48_0011/CA/268:269,
1/CA/370:375,
1/CA/399:406,
1/CA/421:424		No text annotation
homologous
J4_5J7L_018
NA
J4_6U48_0021/CA/297:301,
1/CA/316:319,
1/CA/323:325,
1/CA/337:341		No text annotation
homologous
J4_5J7L_019
NA
J4_6U48_0031/CA/601:604,
1/CA/624:628,
1/CA/635:638,
1/CA/650:656		No text annotation
homologous
J4_5J7L_020
NA
J4_6U48_0041/CA/1270:1276,
1/CA/1294:1295,
1/CA/1645:1648,
1/CA/2009:2010		No text annotation
homologous
J4_5J7L_021
NA
J4_6U48_0051/CA/1310:1314,
1/CA/1338:1343,
1/CA/1404:1405,
1/CA/1597:1604		No text annotation
homologous
J4_5J7L_022
NA
J4_6U48_0061/CA/1313:1314,
1/CA/1338:1343,
1/CA/1404:1405,
1/CA/1597:1603		No text annotation
homologous
J4_5J7L_023
NA
J4_6U48_0071/CA/1444:1445,
1/CA/1466:1467,
1/CA/1525:1526,
1/CA/1546:1547		No text annotation
homologous
J4_5J7L_024
NA
J4_6U48_0081/CA/1772:1776,
1/CA/1788:1792,
1/CA/1827:1830,
1/CA/1975:1979		No text annotation
homologous
J4_5J7L_025
NA
J4_6U48_0091/CA/1833:1835,
1/CA/1905:1906,
1/CA/1924:1933,
1/CA/1967:1972		No text annotation
homologous
J4_9DFE_008
J4_42306.1
J4_6U48_0101/CA/2285:2289,
1/CA/2343:2347,
1/CA/2370:2372,
1/CA/2381:2383		No text annotation
homologous
J4_5J7L_027
NA
J4_6U48_0111/CA/2643:2646,
1/CA/2674:2676,
1/CA/2731:2735,
1/CA/2769:2771		No text annotation
homologous
J4_5J7L_028
NA
J5_6U48_0011/CA/47:54,
1/CA/116:121,
1/CA/130:131,
1/CA/148:150,
1/CA/176:178		No text annotation
homologous
J5_5J7L_013
NA
J5_6U48_0021/CA/531:533,
1/CA/560:564,
1/CA/577:579,
1/CA/1261:1262,
1/CA/2017:2018		No text annotation
homologous
J5_5J7L_014
NA
J5_6U48_0031/CA/584:589,
1/CA/668:671,
1/CA/809:812,
1/CA/1195:1196,
1/CA/1250:1256		No text annotation
homologous
J5_5J7L_015
NA
J5_6U48_0041/CA/1674:1682,
1/CA/1706:1707,
1/CA/1751:1752,
1/CA/1756:1764,
1/CA/1988:1990		No text annotation
homologous
J5_5J7L_016
NA
J5_6U48_0051/CA/2057:2064,
1/CA/2446:2453,
1/CA/2500:2506,
1/CA/2583:2588,
1/CA/2606:2611		No text annotation
J5_6U48_0061/CA/2074:2077,
1/CA/2243:2246,
1/CA/2258:2259,
1/CA/2281:2282,
1/CA/2427:2435		No text annotation
homologous
J5_4WF9_007
J5_39529.2
J6_6U48_0011/CA/45:46,
1/CA/179:183,
1/CA/214:224,
1/CA/231:235,
1/CA/262:266,
1/CA/426:433		No text annotation
J6_6U48_0021/CA/2074:2077,
1/CA/2243:2246,
1/CA/2258:2259,
1/CA/2281:2284,
1/CA/2384:2395,
1/CA/2421:2435		No text annotation
J7_6U48_0011/CA/8:15,
1/CA/525:531,
1/CA/2018:2023,
1/CA/2040:2043,
1/CA/2625:2630,
1/CA/2788:2789,
1/CA/2894:2895		No text annotation
J7_6U48_0021/CA/817:822,
1/CA/835:838,
1/CA/940:946,
1/CA/971:976,
1/CA/987:991,
1/CA/1163:1164,
1/CA/1185:1190		No text annotation

Problematic loops

#loop idProblemSequence
J3_6U48_005No text annotation
J3_6U48_010No text annotation
J3_6U48_021No text annotation

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