HL_6U48_016

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

CGCUUAGGCG

Length

10 nucleotides

Bulged bases

6U48|1|CA|U|546, 6U48|1|CA|G|548

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6U48_016 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.382

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05426.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

6U48|1|CA|C|542
6U48|1|CA|G|543
6U48|1|CA|C|544
6U48|1|CA|U|545
6U48|1|CA|U|546
6U48|1|CA|A|547
6U48|1|CA|G|548
6U48|1|CA|G|549
6U48|1|CA|C|550
6U48|1|CA|G|551

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CK

50S ribosomal protein uL13

Chain CS

50S ribosomal protein bL21