HL_6U48_018

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

CGAAUAG

Length

7 nucleotides

Bulged bases

6U48|1|CA|U|615

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6U48_018 not in the Motif Atlas

Homologous match to HL_5J7L_151

Geometric discrepancy: 0.2185

The information below is about HL_5J7L_151

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

3

Unit IDs

6U48|1|CA|C|611
6U48|1|CA|G|612
6U48|1|CA|A|613
6U48|1|CA|A|614
6U48|1|CA|U|615
6U48|1|CA|A|616
6U48|1|CA|G|617

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CE

50S ribosomal protein uL4