HL_6U48_021

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

GGUAACAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6U48_021 not in the Motif Atlas

Homologous match to HL_5J7L_154

Geometric discrepancy: 0.1299

The information below is about HL_5J7L_154

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6U48|1|CA|G|712
6U48|1|CA|G|713
6U48|1|CA|U|714
6U48|1|CA|A|715
6U48|1|CA|A|716
6U48|1|CA|C|717
6U48|1|CA|A|718
6U48|1|CA|C|719

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CC

50S ribosomal protein uL2