HL_6U48_026

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

G(PSU)GCUAACGU

Length

10 nucleotides

Bulged bases

6U48|1|CA|U|958, 6U48|1|CA|C|961

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6U48_026 not in the Motif Atlas

Homologous match to HL_5J7L_159

Geometric discrepancy: 0.0911

The information below is about HL_5J7L_159

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6U48|1|CA|G|954
6U48|1|CA|PSU|955
6U48|1|CA|G|956
6U48|1|CA|C|957
6U48|1|CA|U|958
6U48|1|CA|A|959
6U48|1|CA|A|960
6U48|1|CA|C|961
6U48|1|CA|G|962
6U48|1|CA|U|963

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CB

5S ribosomal RNA; 5S rRNA

Chain CN

50S ribosomal protein uL16