HL_6U48_027

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

GAAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6U48_027 not in the Motif Atlas

Homologous match to HL_5J7L_160

Geometric discrepancy: 0.0828

The information below is about HL_5J7L_160

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42998.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6U48|1|CA|G|978
6U48|1|CA|A|979
6U48|1|CA|A|980
6U48|1|CA|A|981
6U48|1|CA|C|982
6U48|1|CA|A|983
6U48|1|CA|A|984
6U48|1|CA|C|985

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C0

50S ribosomal protein uL30

Chain CR

50S ribosomal protein bL20

Chain CS

50S ribosomal protein bL21