HL_6U48_035

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

6U48|1|CA|U|1396, 6U48|1|CA|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6U48_035 not in the Motif Atlas

Homologous match to HL_5J7L_168

Geometric discrepancy: 0.1098

The information below is about HL_5J7L_168

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6U48|1|CA|G|1389
6U48|1|CA|U|1390
6U48|1|CA|U|1391
6U48|1|CA|A|1392
6U48|1|CA|A|1393
6U48|1|CA|U|1394
6U48|1|CA|A|1395
6U48|1|CA|U|1396
6U48|1|CA|U|1397
6U48|1|CA|C|1398

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CU

50S ribosomal protein uL23