HL_6U48_043

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

CCUCGCG

Length

7 nucleotides

Bulged bases

6U48|1|CA|U|1729, 6U48|1|CA|C|1732

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6U48_043 not in the Motif Atlas

Geometric match to HL_5J7L_018

Geometric discrepancy: 0.3798

The information below is about HL_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37344.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

6U48|1|CA|C|1727
6U48|1|CA|C|1728
6U48|1|CA|U|1729
6U48|1|CA|C|1730
6U48|1|CA|G|1731
6U48|1|CA|C|1732
6U48|1|CA|G|1733

Current chains

Chain CA

23S rRNA

Nearby chains