HL_6U48_053

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

CUG(OMG)GGCGG

Length

9 nucleotides

Bulged bases

6U48|1|CA|G|2250

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6U48_053 not in the Motif Atlas

Homologous match to HL_5J7L_186

Geometric discrepancy: 0.088

The information below is about HL_5J7L_186

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

6U48|1|CA|C|2248
6U48|1|CA|U|2249
6U48|1|CA|G|2250
6U48|1|CA|OMG|2251
6U48|1|CA|G|2252
6U48|1|CA|G|2253
6U48|1|CA|C|2254
6U48|1|CA|G|2255
6U48|1|CA|G|2256

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CN

50S ribosomal protein uL16

Chain CX

50S ribosomal protein bL27