HL_6U48_055

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

GGUCGGACAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6U48_055 not in the Motif Atlas

Homologous match to HL_7RQB_055

Geometric discrepancy: 0.3079

The information below is about HL_7RQB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.3

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6U48|1|CA|G|2303
6U48|1|CA|G|2304
6U48|1|CA|U|2305
6U48|1|CA|C|2306
6U48|1|CA|G|2307
6U48|1|CA|G|2308
6U48|1|CA|A|2309
6U48|1|CA|C|2310
6U48|1|CA|A|2311
6U48|1|CA|U|2312
6U48|1|CA|C|2313

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CB

5S ribosomal RNA; 5S rRNA

Chain CF

50S ribosomal protein uL5