HL_6U48_060

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

AGUUCAUAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6U48_060 not in the Motif Atlas

Homologous match to HL_5J7L_193

Geometric discrepancy: 0.1249

The information below is about HL_5J7L_193

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32735.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6U48|1|CA|A|2471
6U48|1|CA|G|2472
6U48|1|CA|U|2473
6U48|1|CA|U|2474
6U48|1|CA|C|2475
6U48|1|CA|A|2476
6U48|1|CA|U|2477
6U48|1|CA|A|2478
6U48|1|CA|U|2479

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C5

50S ribosomal protein bL36

Chain CG

50S ribosomal protein uL6

Chain CN

50S ribosomal protein uL16