HL_6U48_067

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

CUUUAAG

Length

7 nucleotides

Bulged bases

6U48|1|CA|U|2797, 6U48|1|CA|A|2800

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6U48_067 not in the Motif Atlas

Homologous match to HL_5J7L_200

Geometric discrepancy: 0.3026

The information below is about HL_5J7L_200

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

6U48|1|CA|C|2795
6U48|1|CA|U|2796
6U48|1|CA|U|2797
6U48|1|CA|U|2798
6U48|1|CA|A|2799
6U48|1|CA|A|2800
6U48|1|CA|G|2801

Current chains

Chain CA

23S rRNA

Nearby chains