HL_6U48_068

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

6U48|1|CA|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6U48_068 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.0731

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6U48|1|CA|G|2819
6U48|1|CA|A|2820
6U48|1|CA|A|2821
6U48|1|CA|G|2822
6U48|1|CA|A|2823
6U48|1|CA|C|2824
6U48|1|CA|G|2825
6U48|1|CA|A|2826
6U48|1|CA|C|2827

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CD

50S ribosomal protein uL3

Chain CO

50S ribosomal protein bL17