HL_6U48_069

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

AGCGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6U48_069 not in the Motif Atlas

Homologous match to HL_7A0S_068

Geometric discrepancy: 0.1103

The information below is about HL_7A0S_068

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

6U48|1|CA|A|2856
6U48|1|CA|G|2857
6U48|1|CA|C|2858
6U48|1|CA|G|2859
6U48|1|CA|A|2860
6U48|1|CA|U|2861

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CQ

50S ribosomal protein bL19