HL_6U48_076

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

ACCCCAUGCCGAACU

Length

15 nucleotides

Bulged bases

6U48|1|CB|C|35, 6U48|1|CB|G|41

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6U48_076 not in the Motif Atlas

Homologous match to HL_4V9F_074

Geometric discrepancy: 0.2261

The information below is about HL_4V9F_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97756.3

Basepair signature

cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F

Number of instances in this motif group

7

Unit IDs

6U48|1|CB|A|34
6U48|1|CB|C|35
6U48|1|CB|C|36
6U48|1|CB|C|37
6U48|1|CB|C|38
6U48|1|CB|A|39
6U48|1|CB|U|40
6U48|1|CB|G|41
6U48|1|CB|C|42
6U48|1|CB|C|43
6U48|1|CB|G|44
6U48|1|CB|A|45
6U48|1|CB|A|46
6U48|1|CB|C|47
6U48|1|CB|U|48

Current chains

Chain CB

5S rRNA

Nearby chains

Chain CA

Large subunit ribosomal RNA; LSU rRNA

Chain CF

50S ribosomal protein uL5

Chain CP

50S ribosomal protein uL18