HL_6U8K_002

3D structure

PDB id

6U8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of hepatitis C virus IRES junction IIIabc in complex with Fab HCV3

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

6U8K|1|A|A|201

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6U8K_002 not in the Motif Atlas

Geometric match to HL_7A0S_044

Geometric discrepancy: 0.1065

The information below is about HL_7A0S_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80709.5

Basepair signature

cWW-F-F-F

Number of instances in this motif group

12

Unit IDs

6U8K|1|A|G|180
6U8K|1|A|G|198
6U8K|1|A|A|199
6U8K|1|A|A|200
6U8K|1|A|A|201
6U8K|1|A|C|219

Current chains

Chain A

JIIIabc RNA (68-MER)

Nearby chains

Chain B

JIIIabc RNA (68-MER)